Publications

2009 Publications

Ahmad RM, Umakanthan R, Lawson M, Leacche M, Solenkova NV, Byrne JG. Nonsurgical management of traumatic cardiac pseudoaneurysms. J Thorac Cardiovasc Surg 2009 May 30; PMID: 19660408 

Brosey CA, Chagot ME, Ehrhardt M, Pretto DI, Weiner BE, Chazin WJ. NMR Analysis of the Architecture and Functional Remodeling of a Modular Multidomain Protein, RPA. J Am Chem Soc 2009 Apr 20; PMID: 19378948 

Campion TR Jr, Gadd CS. Peers, regulators, and professions: the influence of organizations in intensive insulin therapy adoption. Qual Manag Health Care 2009 Apr-Jun;18(2):115-9 PMID: 19369854 

Campion TR Jr, Waitman LR, May AK, Ozdas A, Lorenzi NM, Gadd CS. Social, organizational, and contextual characteristics of clinical decision support systems for intensive insulin therapy: A literature review and case study. Int J Med Inform 2009 Oct 6; PMID: 19815452 

Chourey K, Thompson MR, Shah M, Zhang B, Verberkmoes NC, Thompson DK, Hettich RL. Comparative Temporal Proteomics of a Response Regulator (SO2426)-Deficient Strain and Wild-Type Shewanella oneidensis MR-1 During Chromate Transformation. J Proteome Res 2009 Jan 2;8(1):59-71 PMID: 19118451 

DE Moor MH, Liu YJ, Boomsma DI, Li J, Hamilton JJ, Hottenga JJ, Levy S, Liu XG, Pei YF, Posthuma D, Recker RR, Sullivan PF, Wang L, Willemsen G, Yan H, DE Geus EJ, Deng HW. Genome-Wide Association Study of Exercise Behavior in Dutch and American Adults. Med Sci Sports Exerc 2009 Sep 2; PMID: 19727025 

Denny JC, Bastarache L, Sastre EA, Spickard A. Tracking Medical Students' Clinical Experiences using Natural Language Processing. J Biomed Inform 2009 Feb 20; PMID: 19236956 

Denny JC, Spickard A 3rd, Johnson KB, Peterson NB, Peterson JF, Miller RA. Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents. J Am Med Inform Assoc 2009 Aug 28; PMID: 19717800 

Diaz JJ Jr, Norris PR, Collier BR, Berkes MB, Ozdas A, May AK, Miller RS, Morris JA Jr. Morbid obesity is not a risk factor for mortality in critically ill trauma patients. J Trauma 2009 Jan;66(1):226-31 PMID: 19131831 

Diaz JJ Jr, Norris PR, Miller RS, Rodriguez PA, Riordan WP Jr, Collier BR, May AK, Morris JA Jr. Acute Care Surgery Program: Mentoring Fellows and Patient Outcomes. J Surg Res 2009 May 26; PMID: 19577769 

Durham E, Dorr B, Woetzel N, Staritzbichler R, Meiler J. Solvent accessible surface area approximations for rapid and accurate protein structure prediction. J Mol Model 2009 Feb 21; PMID: 19234730 

Fallen K, Banerjee S, Sheehan J, Addison D, Lewis LM, Meiler J, Denton JS. The Kir channel immunoglobulin domain is essential for Kir1.1 (ROMK) thermodynamic stability, trafficking and gating. Channels (Austin) 2009 Jan 6;3(1) PMID: 19221509 

FitzHenry F, Martin L, Doran J. No more lost clinic charges: using IT for recovery and measurement. Healthc Financ Manage 2009 Sep;63(9):62-4, 66, 68 passim PMID: 19743651 

Friedman CP, Iakovidis I, Debenedetti L, Lorenzi NM. Across the Atlantic cooperation to address international challenges in eHealth and health IT: managing toward a common goal. Int J Med Inform 2009 Nov;78(11):778-84 PMID: 19734085 

Friedman EA, Harris PA, Wood AJ, Stein CM, Kurnik D. The alpha(2C)-adrenoceptor deletion322-325 variant and cold-induced vasoconstriction. Clin Auton Res 2009 May 15; PMID: 19444546 

Frisse ME. Health information technology: one step at a time. Health Aff (Millwood) 2009 Mar-Apr;28(2):w379-84 PMID: 19273814 

Greco JA 3rd, Pollins AC, Boone BE, Levy SE, Nanney LB. A microarray analysis of temporal gene expression profiles in thermally injured human skin. Burns 2009 Sep 23; PMID: 19781859 

Guillamondegui OD, Gunter OL, Patel S, Fleming S, Cotton BA, Morris JA Jr. Acute adrenal insufficiency may affect outcome in the trauma patient. Am Surg 2009 Apr;75(4):287-90 PMID: 19385286 

Han JH, France DJ, Levin SR, Jones ID, Storrow AB, Aronsky D. The Effect of Physician Triage on Emergency Department Length of Stay. J Emerg Med 2009 Jan 24; PMID: 19168306 

Haux R, Lorenzi NM, Lun KC, Rienhoff O, van Bemmel JH. In memoriam steven a. Huesing (1944-2009). Yearb Med Inform 2009;:7-12 PMID: 19855863 

Hoot NR, Epstein SK, Allen TL, Jones SS, Baumlin KM, Chawla N, Lee AT, Pines JM, Klair AK, Gordon BD, Flottemesch TJ, LeBlanc LJ, Jones I, Levin SR, Zhou C, Gadd CS, Aronsky D. Forecasting emergency department crowding: an external, multicenter evaluation. Ann Emerg Med 2009 Oct;54(4):514-522.e19 PMID: 19716629 

Hoot NR, Leblanc LJ, Jones I, Levin SR, Zhou C, Gadd CS, Aronsky D. Forecasting Emergency Department Crowding: A Prospective, Real-Time Evaluation. J Am Med Inform Assoc 2009 Mar 4; PMID: 19261948 

KarakaÅŸ M, Woetzel N, Meiler J. BCL::Contact-Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination. J Comput Biol 2009 Sep 22; PMID: 19772383 

Kaufmann KW, Dawson ES, Henry LK, Field JR, Blakely RD, Meiler J. Structural determinants of species-selective substrate recognition in human and Drosophila serotonin transporters revealed through computational docking studies. Proteins 2009 Feb 15;74(3):630-42 PMID: 18704946 

Kim HY, Tallman KA, Liebler DC, Porter NA. An azido-biotin reagent for use in the isolation of protein adducts of lipid-derived electrophiles by streptavidin catch and photo-release. Mol Cell Proteomics 2009 May 30; PMID: 19483245 

Kohli U, Muszkat M, Sofowora GG, Harris PA, Friedman EA, Dupont WD, Scheinin M, Wood AJ, Stein CM, Kurnik D. Effects of variation in the human alpha(2A)- and alpha(2C)-adrenoceptor genes on cognitive tasks and pain perception. Eur J Pain 2009 May 5; PMID: 19423370 

Li J, Zimmerman LJ, Park BH, Tabb DL, Liebler DC, Zhang B. Network-assisted protein identification and data interpretation in shotgun proteomics. Mol Syst Biol 2009;5:303 PMID: 19690572 

Liebler DC. Summary of United States Human Proteome Organisation (HUPO) symposium entitled "Standardized clinical proteomics platforms". Mol Cell Proteomics 2009 May;8(5):1165-6 PMID: 19411290 

Lindert S, Staritzbichler R, Wötzel N, KarakaÅŸ M, Stewart PL, Meiler J. EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps. Structure 2009 Jul 15;17(7):990-1003 PMID: 19604479 

Lindert S, Stewart PL, Meiler J. Hybrid approaches: applying computational methods in cryo-electron microscopy. Curr Opin Struct Biol 2009 Mar 30; PMID: 19339173 

Loeber RL, Michaelson-Richie ED, Codreanu SG, Liebler DC, Campbell CR, Tretyakova NY. Proteomic Analysis of DNA-Protein Cross-Linking by Antitumor Nitrogen Mustards. Chem Res Toxicol 2009 May 29; PMID: 19480393 

Loecken EM, Dasari S, Hill S, Tabb DL, Guengerich FP. The bis-Electrophile Diepoxybutane Cross-Links DNA to Human Histones but Does Not Result in Enhanced Mutagenesis in Recombinant Systems. Chem Res Toxicol 2009 Apr 13; PMID: 19364102 

Lorenzi NM, Kouroubali A, Detmer DE, Bloomrosen M. How to successfully select and implement electronic health records (EHR) in small ambulatory practice settings. BMC Med Inform Decis Mak 2009 Feb 23;9(1):15 PMID: 19236705 

Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson BW, Tabb DL. IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering. J Proteome Res 2009 Jun 24; PMID: 19522537 

Matheny ME, Morrow DA, Ohno-Machado L, Cannon CP, Sabatine MS, Resnic FS. Validation of an automated safety surveillance system with prospective, randomized trial data. Med Decis Making 2009 Mar-Apr;29(2):247-56 PMID: 19015285 

McConnell RE, Higginbotham JN, Shifrin DA Jr, Tabb DL, Coffey RJ, Tyska MJ. The enterocyte microvillus is a vesicle-generating organelle. J Cell Biol 2009 Jun 29;185(7):1285-98 PMID: 19564407 

Merrill J, Keeling J, Gebbie K. Toward standardized, comparable public health systems data: a taxonomic description of essential public health work. Health Serv Res 2009 Oct;44(5 Pt 2):1818-41 PMID: 19686248 

Miller RA. Computer-assisted diagnostic decision support: history, challenges, and possible paths forward. Adv Health Sci Educ Theory Pract 2009 Aug 12; PMID: 19672686 

Moore PE, Ryckman KK, Williams SM, Patel N, Summar ML, Sheller JR. Genetic variants of GSNOR and ADRB2 influence response to albuterol in African-American children with severe asthma. Pediatr Pulmonol 2009 Jun 9; PMID: 19514054 

Morris JA Jr, Francois C, Olson PK, Cotton BA, Summar M, Jenkins JM, Norris PR, Moore JH, Williams AE, McNew BS, Canter JA. Genetic variation in complement component 2 of the classical complement pathway is associated with increased mortality and infection: a study of 627 patients with trauma. J Trauma 2009 May;66(5):1265-70; discussion 1270-2 PMID: 19430225 

Morris JA Jr, Norris PR, Moore JH, Jenkins JM, Williams AE, Canter JA. Genetic variation in the autonomic nervous system affects mortality: a study of 1,095 trauma patients. J Am Coll Surg 2009 May;208(5):663-8 PMID: 19476811 

Mowery NT, Dortch MJ, Dossett LA, Norris PR, Diaz JJ Jr, Morris JA Jr, May AK. Review of a large clinical series: insulin resistance despite tight glucose control is associated with mortality in critically ill surgical patients. J Intensive Care Med 2009 Jul-Aug;24(4):242-51 PMID: 19617231 

Norris PR, Canter JA, Jenkins JM, Moore JH, Williams AE, Morris JA Jr. Personalized Medicine: Genetic Variation and Loss of Physiologic Complexity Are Associated With Mortality in 644 Trauma Patients. Ann Surg 2009 Aug 27; PMID: 19730237 

Patel CO, Cimino JJ. Using semantic and structural properties of the unified medical language system to discover potential terminological relationships. J Am Med Inform Assoc 2009 May-Jun;16(3):346-53 PMID: 19261940 

Riordan WP Jr, Norris PR, Jenkins JM, Morris JA Jr. Early loss of heart rate complexity predicts mortality regardless of mechanism, anatomic location, or severity of injury in 2178 trauma patients. J Surg Res 2009 Oct;156(2):283-9 PMID: 19592027 

Rosenbloom ST, Brown SH, Froehling D, Bauer BA, Wahner-Roedler DL, Gregg WM, Elkin PL. Using SNOMED CT to represent two interface terminologies. J Am Med Inform Assoc 2009 Jan-Feb;16(1):81-8 PMID: 18952944 

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Mulayath Variyath A, Wang M Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomic analyses and evaluation by the CPTAC network. Mol Cell Proteomics 2009 Oct 22; PMID: 19837981 

Slagle JM, Weinger MB. Effects of Intraoperative Reading on Vigilance and Workload during Anesthesia Care in an Academic Medical Center. Anesthesiology 2009 Feb;110(2):275-283 PMID: 19194155 

Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol Cell Proteomics 2009 May 24; PMID: 19467989 

Stepanovic SZ, Potet F, Petersen CI, Smith JA, Meiler J, Balser JR, Kupershmidt S. The evolutionarily conserved residue A653 plays a key role in HERG channel closing. J Physiol 2009 Apr 30; PMID: 19406877 

Stowers CC, Robertson JB, Ban H, Tanner RD, Boczko EM. Periodic Fermentor Yield and Enhanced Product Enrichment from Autonomous Oscillations. Appl Biochem Biotechnol 2009 Jan 30; PMID: 19184548 

Stucky ER, Dresselhaus TR, Dollarhide A, Shively M, Maynard G, Jain S, Wolfson T, Weinger MB, Rutledge T. Intern to Attending: Assessing Stress Among Physicians. Acad Med 2009 Feb;84(2):251-257 PMID: 19174680 

Sun J, Jia P, Fanous AH, Webb BT, van den Oord EJ, Chen X, Bukszar J, Kendler KS, Zhao Z. A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases - schizophrenia as a case. Bioinformatics 2009 Jul 14; PMID: 19602527 

Trangenstein PA, Weiner EE, Gordon JS, McArthur D. Nursing Informatics for Future Nurse Scholars: Lessons Learned with the Doctorate of Nursing Practice (DNP). Stud Health Technol Inform 2009;146:551-5 PMID: 19592903 

Umakanthan R, Brewer ZE, Byrne JG, Ahmad RM. Use of the hybrid operating room for aortic valve replacement in a patient with anomalous left circumflex artery. J Thorac Cardiovasc Surg 2009 Jul 2; PMID: 19660274 

Unertl KM, Weinger MB, Johnson KB, Lorenzi NM. Describing and modeling workflow and information flow in chronic disease care. J Am Med Inform Assoc 2009 Aug 28; PMID: 19717802 

Wehbe FH, Brown SH, Massion PP, Gadd CS, Masys DR, Aliferis CF. A novel information retrieval model for high-throughput molecular medicine modalities. Cancer Inform 2009 Feb 9;8:1-17 PMID: 19458790 

Weiner EE, Trangenstein PA. The emerging role of educational informatics. Stud Health Technol Inform 2009;146:567-71 PMID: 19592906 

Xu H, Stetson PD, Friedman C. Methods for building sense inventories of abbreviations in clinical notes. J Am Med Inform Assoc 2009 Jan-Feb;16(1):103-8 PMID: 18952935 

Zhao DX, Leacche M, Balaguer JM, Boudoulas KD, Damp JA, Greelish JP, Byrne JG, Ahmad RM, Ball SK, Cleator JH, Deegan RJ, Eagle SS, Fong PP, Fredi JL, Hoff SJ, Jennings HS 3rd, McPherson JA, Piana RN, Pretorius M, Robbins MA, Slosky DA, Thompson A. Routine intraoperative completion angiography after coronary artery bypass grafting and 1-stop hybrid revascularization results from a fully integrated hybrid catheterization laboratory/operating room. J Am Coll Cardiol 2009 Jan 20;53(3):232-41 PMID: 19147039 

Zheng W, Long J, Gao YT, Li C, Zheng Y, Xiang YB, Wen W, Levy S, Deming SL, Haines JL, Gu K, Fair AM, Cai Q, Lu W, Shu XO. Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1. Nat Genet 2009 Feb 15; PMID: 19219042