Publications

2010 Publications

Angel PM, Nusinow D, Brown CB, Violette K, Barnett JV, Zhang B, Baldwin HS, Caprioli RM. Networked-based Characterization of Extracellular Matrix Proteins from Adult Mouse Pulmonary and Aortic Valves. J Proteome Res 2010 Dec 22; PMID: 21133377 

Baucum AJ 2nd, Jalan-Sakrikar N, Jiao Y, Gustin RM, Carmody LC, Tabb DL, Ham AJ, Colbran RJ. Identification and validation of novel spinophilin-associated proteins in rodent striatum using an enhanced ex vivo shotgun proteomics approach. Mol Cell Proteomics 2010 Feb 2; PMID: 20124353 

Benesh AE, Nambiar R, McConnell RE, Mao S, Tabb DL, Tyska MJ. Differential Localization and Dynamics of Class I Myosins in the Enterocyte Microvillus. Mol Biol Cell 2010 Jan 20; PMID: 20089841 

Benitez K, Malin B. Evaluating re-identification risks with respect to the HIPAA privacy rule. J Am Med Inform Assoc 2010 Mar 1;17(2):169-77 PMID: 20190059 

Bhave G, Chauder BA, Liu W, Dawson ES, Kadakia R, Nguyen TT, Lewis LM, Meiler J, Weaver CD, Satlin LM, Lindsley CW, Denton JS. Development of a selective small-molecule inhibitor of Kir1.1, the Renal Outer Medullary Potassium Channel. Mol Pharmacol 2010 Oct 6; PMID: 20926757 

Boczko EM, Stowers CC, Gedeon T, Young TR. ODE, RDE and SDE Models of Cell Cycle Dynamics and Clustering in Yeast. J Biol Dyn 2010 Jul 1;4(4):328-345 PMID: 20563236 

Bush WS, Dudek SM, Ritchie MD. Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus. Bioinformatics 2010 Feb 15;26(4):578-9 PMID: 20130027 

Campion TR Jr, May AK, Waitman LR, Ozdas A, Gadd CS. Effects of blood glucose transcription mismatches on a computer-based intensive insulin therapy protocol. Intensive Care Med 2010 Mar 30; PMID: 20352190 

Campion TR, Gadd CS. Peers, regulators, and professions: the influence of organizations in health information technology adoption. AMIA Annu Symp Proc 2010 Nov 13;2010:86-90 PMID: 21346946 

Campion TR, Weinberg ST, Lorenzi NM, Waitman LR. Evaluation of Computerized Free Text Sign-Out Notes: Baseline Understanding and Recommendations. Appl Clin Inform 2010 Apr 1;1(3):304-317 PMID: 21258575 

Canter JA, Robbins GK, Selph D, Clifford DB, Kallianpur AR, Shafer R, Levy S, Murdock DG, Ritchie MD, Haas DW, Hulgan T. African Mitochondrial DNA Subhaplogroups and Peripheral Neuropathy during Antiretroviral Therapy. J Infect Dis 2010 Apr 19; PMID: 20402593 

Chmielecki J, Peifer M, Jia P, Socci ND, Hutchinson K, Viale A, Zhao Z, Thomas RK, Pao W. Targeted next-generation sequencing of DNA regions proximal to a conserved GXGXXG signaling motif enables systematic discovery of tyrosine kinase fusions in cancer. Nucleic Acids Res 2010 Jun 29; PMID: 20587502 

Dasari S, Chambers MC, Slebos RJ, Zimmerman LJ, Ham AJ, Tabb DL. TagRecon: High-Throughput Mutation Identification through Sequence Tagging. J Proteome Res 2010 Mar 1; PMID: 20131910 

Dave S, Sheehan JH, Meiler J, Strange K. Unique gating properties of C. elegans ClC anion channel splice variants are determined by altered CBS domain conformation and the R-helix linker. Channels (Austin) 2010 Jul 21;4(4) PMID: 20581474 

Denny JC, Peterson JF, Choma NN, Xu H, Miller RA, Bastarache L, Peterson NB. Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J Am Med Inform Assoc 2010 Jul 1;17(4):383-388 PMID: 20595304 

Denny JC, Ritchie MD, Basford M, Pulley J, Bastarache L, Brown-Gentry K, Wang D, Masys DR, Roden DM, Crawford DC. PheWAS: Demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics 2010 Mar 24; PMID: 20335276 

Denny JC, Ritchie MD, Crawford DC, Schildcrout JS, Ramirez AH, Pulley JM, Basford MA, Masys DR, Haines JL, Roden DM. Identification of Genomic Predictors of Atrioventricular Conduction. Using Electronic Medical Records as a Tool for Genome Science. Circulation 2010 Nov 1; PMID: 21041692 

Denny JC, Speltz P, Maddox R, Stein G, Xu H, Spickard A. Comparing content coverage in medical curriculum to trainee-authored clinical notes. AMIA Annu Symp Proc 2010 Nov 13;2010:157-61 PMID: 21346960 

Ding R, McCarthy ML, Desmond JS, Lee JS, Aronsky D, Zeger SL. Characterizing Waiting Room Time, Treatment Time, and Boarding Time in the Emergency Department Using Quantile Regression. Acad Emerg Med 2010 Aug;17(8):813-823 PMID: 20670318 

Doan S, Bastarache L, Klimkowski S, Denny JC, Xu H. Integrating existing natural language processing tools for medication extraction from discharge summaries. J Am Med Inform Assoc 2010 Sep 1;17(5):528-531 PMID: 20819857 

Duda SN, Wehbe FH, Gadd CS. Desiderata for a Computer-Assisted Audit Tool for Clinical Data Source Verification Audits. Stud Health Technol Inform 2010;160:894-898 PMID: 20841814 

Dumitrescu L, Ritchie MD, Brown-Gentry K, Pulley JM, Basford M, Denny JC, Oksenberg JR, Roden DM, Haines JL, Crawford DC. Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records. Genet Med 2010 Aug 20; PMID: 20733501 

Durham E, Xue Y, Kantarcioglu M, Malin B. Private medical record linkage with approximate matching. AMIA Annu Symp Proc 2010 Nov 13;2010:182-6 PMID: 21346965 

France DJ, Greevy RA Jr, Liu X, Burgess H, Dittus RS, Weinger MB, Speroff T. Measuring and Comparing Safety Climate in Intensive Care Units. Med Care 2010 Feb 1; PMID: 20125046 

Frisse ME, Tang L, Belsito A, Overhage JM. Development and use of a medication history service associated with a health information exchange: architecture and preliminary findings. AMIA Annu Symp Proc 2010 Nov 13;2010:242-5 PMID: 21346977 

Frisse ME. Health information exchange in memphis: impact on the physician-patient relationship. J Law Med Ethics 2010 Mar;38(1):50-7 PMID: 20446983 

Giuse NB, Williams AM, Giuse DA. Integrating best evidence into patient care: a process facilitated by a seamless integration with informatics tools. J Med Libr Assoc 2010 Jul;98(3):220-2 PMID: 20648255 

Gordon J, Weiner E, McNew R, Trangenstein P. Teaching During a Pandemic Event: Are Universities Prepared? Stud Health Technol Inform 2010;160:620-624 PMID: 20841761 

Gregory KJ, Dong EN, Meiler J, Conn PJ. Allosteric Modulation of Metabotropic Glutamate Receptors: Structural Insights and Therapeutic Potential. Neuropharmacology 2010 Jul 13; PMID: 20637216 

Grogan EL, Deppen S, Pecot CV, Putnam JB Jr, Nesbitt JC, Shyr Y, Rajanbabu R, Ory B, Lambright ES, Massion PP. Diagnostic Characteristics of a Serum Biomarker in Patients With Positron Emission Tomography Scans. Ann Thorac Surg 2010 Jun;89(6):1724-1729 PMID: 20494018 

Guo AY, Sun J, Jia P, Zhao Z. A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst Biol 2010 Feb 15;4:10 PMID: 20156358 

Guo AY, Sun J, Jia P, Zhao Z. Network Analysis of EtOH-Related Candidate Genes. Chem Biodivers 2010 May 20;7(5):1142-1152 PMID: 20491071 

Hirst SJ, Alexander N, McHaourab HS, Meiler J. rosettaEPR: An integrated tool for protein structure determination from sparse EPR data. J Struct Biol 2010 Oct 26; PMID: 21029778 

Huang H, Weiner BE, Zhang H, Fuller BE, Gao Y, Wile BM, Zhao K, Arnett DR, Chazin WJ, Fanning E. The SV40 replisome: Structure of a DNA polymerase {alpha}-primase domain that docks on the helicase and regulates primosome activity. J Biol Chem 2010 Mar 16; PMID: 20234039 

Jacobs AT, Marnett LJ. Systems Analysis of Protein Modification and Cellular Responses Induced by Electrophile Stress. Acc Chem Res 2010 Mar 10; PMID: 20218676 

Jia P, Sun J, Guo AY, Zhao Z. SZGR: a comprehensive schizophrenia gene resource. Mol Psychiatry 2010 May;15(5):453-62 PMID: 20424623 

Jia P, Wang L, Meltzer HY, Zhao Z. Common variants conferring risk of schizophrenia: A pathway analysis of GWAS data. Schizophr Res 2010 Jul 24; PMID: 20659789 

Jia P, Wang L, Meltzer HY, Zhao Z. Pathway-based analysis of GWAS datasets: effective but caution required. Int J Neuropsychopharmacol 2010 Dec 16;:1-6 PMID: 21208483 

Jia P, Zheng S, Long J, Zheng W, Zhao Z. dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinformatics 2010 Nov 2; PMID: 21045073 

Johnson KB, Harris C, Forstein M, Joffe A. Adolescent conversion disorder and the importance of competence discussing sexual orientation. Clin Pediatr (Phila) 2010 May;49(5):491-4 PMID: 20139108 

Jones ID, Slovis CM. Pitfalls in evaluating the low-risk chest pain patient. Emerg Med Clin North Am 2010 Feb;28(1):183-201 PMID: 19945606 

Kaufmann K, Shen N, Mizoue L, Meiler J. A physical model for PDZ-domain/peptide interactions. J Mol Model 2010 May 12; PMID: 20461427 

Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J. Practically Useful: What the Rosetta Protein Modeling Suite Can Do for You. Biochemistry 2010 Mar 17; PMID: 20235548 

Kazmier K, Alexander NS, Meiler J, McHaourab HS. Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination. J Struct Biol 2010 Nov 10; PMID: 21074624 

Lebois EP, Bridges TM, Lewis LM, Dawson ES, Kane AS, Xiang Z, Jadhav SB, Yin H, Kennedy JP, Meiler J, Niswender CM, Jones CK, Conn PJ, Weaver CD, Lindsley CW. Discovery and characterization of novel subtype-selective allosteric agonists for the investigation of M(1) receptor function in the central nervous system. ACS Chem Neurosci 2010;1(2):104-121 PMID: 21961051 

Li J, Duncan DT, Zhang B. CanProVar: a human cancer proteome variation database. Hum Mutat 2010 Jan 5; PMID: 20052754 

Li M, Gray W, Zhang H, Chung CH, Billheimer D, Yarbrough WG, Liebler DC, Shyr Y, Slebos RJ. Comparative shotgun proteomics using spectral count data and quasi-likelihood modeling. J Proteome Res 2010 Aug 6;9(8):4295-305 PMID: 20586475 

Lin D, Li J, Slebos RJ, Liebler DC. Cysteinyl Peptide Capture for Shotgun Proteomics: Global Assessment of Chemoselective Fractionation. J Proteome Res 2010 Sep 8; PMID: 20731415 

Lorenzi N. Furniture factors. Hospital demand drives product attributes. Health Facil Manage 2010 Aug;23(8):26-30 PMID: 20828052 

Lorenzi N. Locked up. Trends in hospital access control devices and technologies. Health Facil Manage 2010 Oct;23(10):40-4 PMID: 21090222 

Lorenzi N. Cleaning up. Trends in housekeeping equipment and supplies. Health Facil Manage 2010 Jul;23(7):32-6 PMID: 21638953 

Loukides G, Denny JC, Malin B. The disclosure of diagnosis codes can breach research participants' privacy. J Am Med Inform Assoc 2010 May 1;17(3):322-7 PMID: 20442151 

Loukides G, Gkoulalas-Divanis A, Malin B. Anonymization of electronic medical records for validating genome-wide association studies. Proc Natl Acad Sci U S A 2010 Apr 12; PMID: 20385806 

Lowe EW Jr, Ferrebee A, Rodriguez AL, Conn PJ, Meiler J. 3D-QSAR CoMFA study of benzoxazepine derivatives as mGluR(5) positive allosteric modulators. Bioorg Med Chem Lett 2010 Jul 30; PMID: 20732812 

Maclean B, Tomazela DM, Shulman N, Chambers M, Finney GL, Frewen B, Kern R, Tabb DL, Liebler DC, Maccoss MJ. Skyline: An Open Source Document Editor for Creating and Analyzing Targeted Proteomics Experiments. Bioinformatics 2010 Feb 9; PMID: 20147306 

Malin B, Karp D, Scheuermann RH. Technical and policy approaches to balancing patient privacy and data sharing in clinical and translational research. J Investig Med 2010 Jan;58(1):11-8 PMID: 20051768 

Manders EJ, José E, Solis M, Burlison J, Nhampossa JL, Moon T. Implementing OpenMRS for patient monitoring in an HIV/AIDS care and treatment program in rural Mozambique. Stud Health Technol Inform 2010;160:411-415 PMID: 20841719 

Marshall GT, James RF, Landman MP, Oʼneill PJ, Cotton BA, Hansen EN, Morris JA Jr, May AK. Pentobarbital Coma For Refractory Intra-Cranial Hypertension After Severe Traumatic Brain Injury: Mortality Predictions and One-Year Outcomes in 55 Patients. J Trauma 2010 Aug;69(2):275-283 PMID: 20699736 

Matheny ME, Miller RA, Ikizler TA, Waitman LR, Denny JC, Schildcrout JS, Dittus RS, Peterson JF. Development of Inpatient Risk Stratification Models of Acute Kidney Injury for Use in Electronic Health Records. Med Decis Making 2010 November-December;30(6):639-650 PMID: 20354229 

McCoy AB, Waitman LR, Gadd CS, Danciu I, Smith JP, Lewis JB, Schildcrout JS, Peterson JF. A Computerized Provider Order Entry Intervention for Medication Safety During Acute Kidney Injury: A Quality Improvement Report. Am J Kidney Dis 2010 Aug 13; PMID: 20709437 

Michaelson-Richie ED, Loeber RL, Codreanu SG, Ming X, Liebler DC, Campbell C, Tretyakova NY. DNA-Protein Cross-Linking by 1,2,3,4-Diepoxybutane. J Proteome Res 2010 Aug 18; PMID: 20666492 

Miller A, Weinger MB, Buerhaus P, Dietrich MS. Care coordination in intensive care units: communicating across information spaces. Hum Factors 2010 Apr;52(2):147-61 PMID: 20942247 

Miller BM, Moore DE Jr, Stead WW, Balser JR. Beyond Flexner: a new model for continuous learning in the health professions. Acad Med 2010 Feb;85(2):266-72 PMID: 20107354 

Miller RA. A History of the INTERNIST-1 and Quick Medical Reference (QMR) Computer-Assisted Diagnosis Projects, with Lessons Learned. Yearb Med Inform 2010;:121-36 PMID: 20938584 

Miller RS, Norris PR, Jenkins JM, Talbot TR 3rd, Starmer JM, Hutchison SA, Carr DS, Kleymeer CJ, Morris JA Jr. Systems initiatives reduce healthcare-associated infections: a study of 22,928 device days in a single trauma unit. J Trauma 2010 Jan;68(1):23-31 PMID: 20065753 

Motsinger-Reif AA, Antas PR, Oki NO, Levy S, Holland SM, Sterling TR. Polymorphisms in IL-1beta, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis. BMC Med Genet 2010 Mar 2;11(1):37 PMID: 20196868 

Moyer CA, Arnold L, Quaintance J, Braddock C, Spickard A 3rd, Wilson D, Rominski S, Stern DT. What Factors Create a Humanistic Doctor? A Nationwide Survey of Fourth-Year Medical Students. Acad Med 2010 Sep 28; PMID: 20881828 

Mulvaney SA, Rothman RL, Osborn CY, Lybarger C, Dietrich MS, Wallston KA. Self-management problem solving for adolescents with type 1 diabetes: Intervention processes associated with an Internet program. Patient Educ Couns 2010 Oct 26; PMID: 21030194 

Muszkat M, Kurnik D, Sofowora GG, Solus J, Xie HG, Harris PA, Williams SM, Wood AJ, Stein CM. Desensitization of vascular response in vivo: contribution of genetic variation in the alpha2B-adrenergic receptor subtype. J Hypertens 2010 Jan 5; PMID: 20051907 

Nannemann DP, Kaufmann KW, Meiler J, Bachmann BO. Design and directed evolution of a dideoxy purine nucleoside phosphorylase. Protein Eng Des Sel 2010 Jun 4; PMID: 20525731 

Novak LL. Improving Health IT through Understanding the Cultural Production of Safety in Clinical Settings. Stud Health Technol Inform 2010;157:175-80 PMID: 20543385 

Patel CO, Cimino JJ. A network-theoretic approach for decompositional translation across Open Biological Ontologies. J Biomed Inform 2010 Aug;43(4):608-12 PMID: 20144734 

Peterson JF, Shi Y, Denny JC, Matheny ME, Schildcrout JS, Waitman LR, Miller RA. Prevalence and Clinical Significance of Discrepancies within Three Computerized Pre-Admission Medication Lists. AMIA Annu Symp Proc 2010 Nov 13;2010:642-6 PMID: 21347057 

Pisters KM, Vallières E, Crowley JJ, Franklin WA, Bunn PA Jr, Ginsberg Dagger RJ, Putnam JB Jr, Chansky K, Gandara D. Surgery With or Without Preoperative Paclitaxel and Carboplatin in Early-Stage Non-Small-Cell Lung Cancer: Southwest Oncology Group Trial S9900, an Intergroup, Randomized, Phase III Trial. J Clin Oncol 2010 Mar 15; PMID: 20231678 

Pulley J, Clayton E, Bernard GR, Roden DM, Masys DR. Principles of human subjects protections applied in an opt-out, de-identified biobank. Clin Transl Sci 2010 Feb;3(1):42-8 PMID: 20443953 

Pulley J, Hassan NN, Bernard GR, Jirjis JN, Schildcrout J, Robertson D, Masys DR, Harris P. Identifying Unpredicted Drug Benefit through Query of Patient Experiential Knowledge: A Proof of Concept Web-Based System. Clin Transl Sci 2010 Jun;3(3):98-103 PMID: 20590678 

Pulley JM, Harris PA, Yarbrough T, Swafford J, Edwards T, Bernard GR. An informatics-based tool to assist researchers in initiating research at an academic medical center: Vanderbilt Customized Action Plan. Acad Med 2010 Jan;85(1):164-8 PMID: 20042844 

Putnam JB Jr. Outcomes of surgery for chest wall sarcomas. Thorac Surg Clin 2010 Nov;20(4):535-42 PMID: 20974437 

Ramirez AH, Schildcrout JS, Blakemore DL, Masys DR, Pulley JM, Basford MA, Roden DM, Denny JC. Modulators of normal ECG intervals identified in a large electronic medical record. Heart Rhythm 2010 Oct 28; PMID: 21044898 

Ritchie MD, Bush WS. Genome simulation approaches for synthesizing in silico datasets for human genomics. Adv Genet 2010;72:1-24 PMID: 21029846 

Ritchie MD, Denny JC, Crawford DC, Ramirez AH, Weiner JB, Pulley JM, Basford MA, Brown-Gentry K, Balser JR, Masys DR, Haines JL, Roden DM. Robust Replication of Genotype-Phenotype Associations across Multiple Diseases in an Electronic Medical Record. Am J Hum Genet 2010 Mar 31; PMID: 20362271 

Rosenbloom ST, Stead WW, Denny JC, Giuse D, Lorenzi NM, Brown SH, Johnson KB. Generating Clinical Notes for Electronic Health Record Systems. Appl Clin Inform 2010 Jan 1;1(3):232-243 PMID: 21031148 

Russ S, Jones I, Aronsky D, Dittus RS, Slovis CM. Placing Physician Orders at Triage: The Effect on Length of Stay. Ann Emerg Med 2010 Mar 15; PMID: 20236731 

Salomon RM, Blackford JU, Rosenbloom ST, Seidel S, Clayton EW, Dilts DM, Finder SG. Openness of patients' reporting with use of electronic records: psychiatric clinicians' views. J Am Med Inform Assoc 2010 Jan-Feb;17(1):54-60 PMID: 20064802 

Schildcrout JS, Basford M, Pulley J, Masys DR, Roden DM, Wang D, Chute CG, Kullo IJ, Carrell D, Peissig P, Kho A, Denny JC. An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J Biomed Inform 2010 Aug 2; PMID: 20688191 

Shi Z, Derow CK, Zhang B. Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression. BMC Syst Biol 2010 May 27;4:74 PMID: 20507583 

Siew ED, Ikizler TA, Gebretsadik T, Shintani A, Wickersham N, Bossert F, Peterson JF, Parikh CR, May AK, Ware LB. Elevated urinary IL-18 levels at the time of ICU admission predict adverse clinical outcomes. Clin J Am Soc Nephrol 2010 Aug;5(8):1497-505 PMID: 20558561 

Slagle JM, Gordon JS, Harris CE, Davison CL, Culpepper DK, Scott P, Johnson KB. MyMediHealth - designing a next generation system for child-centered medication management. J Biomed Inform 2010 Oct;43(5 Suppl):S27-31 PMID: 20937481 

Smith JC, Schatz BR. Feasibility of mobile phone-based management of chronic illness. AMIA Annu Symp Proc 2010 Nov 13;2010:757-61 PMID: 21347080 

Speroff T, Nwosu S, Greevy R, Weinger MB, Talbot TR, Wall RJ, Deshpande JK, France DJ, Ely EW, Burgess H, Englebright J, Williams MV, Dittus RS. Organisational culture: variation across hospitals and connection to patient safety climate. Qual Saf Health Care 2010 Dec;19(6):592-6 PMID: 21127115 

Starmer JM, Wright Pinson C, Lorenzi NM. Informatics and Evidence-Based Medicine: Prescription for Success. Stud Health Technol Inform 2010;160:656-660 PMID: 20841768 

Stead WW, Gregg WM, Jirjis JN. Extending closed-loop control to the management of chronic disease. Trans Am Clin Climatol Assoc 2010;122:93-102 PMID: 21686212 

Stead WW, Searle JR, Fessler HE, Smith JW, Shortliffe EH. Biomedical Informatics: Changing What Physicians Need to Know and How They Learn. Acad Med 2010 Aug 12; PMID: 20711055 

Stead WW. Electronic health records. Stud Health Technol Inform 2010;153:119-43 PMID: 20543242 

Stenner SP, Chen Q, Johnson KB. Impact of generic substitution decision support on electronic prescribing behavior. J Am Med Inform Assoc 2010 Nov 1;17(6):681-8 PMID: 20962131 

Sun J, Jia P, Fanous AH, van den Oord E, Chen X, Riley BP, Amdur RL, Kendler KS, Zhao Z. Schizophrenia gene networks and pathways and their applications for novel candidate gene selection. PLoS One 2010 Jun 29;5(6):e11351 PMID: 20613869 

Sun J, Stowers CC, Boczko EM, Li D. Measurement of the volume growth rate of single budding yeast with the MOSFET-based microfluidic Coulter counter. Lab Chip 2010 Aug 18; PMID: 20717618 

Sun J, Wan C, Jia P, Fanous AH, Kendler KS, Riley BP, Zhao Z. Application of systems biology approach identifies and validates GRB2 as a risk gene for schizophrenia in the Irish Case Control Study of Schizophrenia (ICCSS) sample. Schizophr Res 2010 Dec 30; PMID: 21195589 

Sun J, Zhao Z. Functional Features, Biological Pathways, and Protein Interaction Networks of Addiction-Related Genes. Chem Biodivers 2010 May 20;7(5):1153-1162 PMID: 20491072 

Sun J, Zhao Z. A comparative study of cancer proteins in the human protein-protein interaction network. BMC Genomics 2010 Dec 1;11 Suppl 3:S5 PMID: 21143787 

Talbot TR, Starmer JM. Does the Specific Time of Day Used to Capture Data on Ventilator-Days Have an Impact on the Documented Rates of Ventilator-Associated Pneumonia? Infect Control Hosp Epidemiol 2010 Mar 24; PMID: 20334510 

Tamersoy A, Loukides G, Denny JC, Malin B. Anonymization of administrative billing codes with repeated diagnoses through censoring. AMIA Annu Symp Proc 2010 Nov 13;2010:782-6 PMID: 21347085 

Trangenstein PA, Weiner EE, Gordon JS, McNew R. An Analysis of Nursing Education's Immersion into Second Life, a Multi-user Virtual Environment (MUVE). Stud Health Technol Inform 2010;160:644-647 PMID: 20841766 

Tu C, Rudnick PA, Martinez MY, Cheek KL, Stein SE, Slebos RJ, Liebler DC. Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics. J Proteome Res 2010 Aug 31; PMID: 20677825 

Turner SD, Dudek SM, Ritchie MD. ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci. BioData Min 2010 Sep 27;3(1):5 PMID: 20875103 

Umakanthan R, Dubose R, Byrne JG, Ahmad RM. Preoperative optimization of multi-organ failure following acute myocardial infarction and ischemic mitral regurgitation by placement of a transthoracic intra-aortic balloon pump. Heart Surg Forum 2010 Oct 1;13(5):E342-4 PMID: 20961840 

Umakanthan R, Petracek MR, Leacche M, Solenkova NV, Eagle SS, Thompson A, Ahmad RM, Greelish JP, Ball SK, Hoff SJ, Absi TS, Balaguer JM, Byrne JG. Minimally invasive right lateral thoracotomy without aortic cross-clamping: an attractive alternative to repeat sternotomy for reoperative mitral valve surgery. J Heart Valve Dis 2010 Mar;19(2):236-43 PMID: 20369510 

Unertl KM, Novak LL, Johnson KB, Lorenzi NM. Traversing the many paths of workflow research: developing a conceptual framework of workflow terminology through a systematic literature review. J Am Med Inform Assoc 2010 May 1;17(3):265-73 PMID: 20442143 

Weiner E, McNew R, Trangenstein P, Gordon J. Using the Virtual Reality World of Second Life to Teach Nursing Faculty Simulation Management. Stud Health Technol Inform 2010;160:615-619 PMID: 20841760 

Weinger MB. The pharmacology of simulation: a conceptual framework to inform progress in simulation research. Simul Healthc 2010 Feb;5(1):8-15 PMID: 20383084 

Wrenn K, Lorenzen B, Jones I, Zhou C, Aronsky D. Factors affecting stress in emergency medicine residents while working in the ED. Am J Emerg Med 2010 Mar 24; PMID: 20825921 

Wylie CJ, Hendricks TJ, Zhang B, Wang L, Lu P, Leahy P, Fox S, Maeno H, Deneris ES. Distinct transcriptomes define rostral and caudal serotonin neurons. J Neurosci 2010 Jan 13;30(2):670-84 PMID: 20071532 

Xu H, Stenner SP, Doan S, Johnson KB, Waitman LR, Denny JC. MedEx: a medication information extraction system for clinical narratives. J Am Med Inform Assoc 2010 Jan-Feb;17(1):19-24 PMID: 20064797 

Zhao Z, Jiang C. Features of recent codon evolution: a comparative polymorphism-fixation study. J Biomed Biotechnol 2010;2010:202918 PMID: 20622912